PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00632A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 189aa    MW: 20210 Da    PI: 8.5008
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00632AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13549348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +W++eEd  l   v+++G ++W++I++ ++  R +k+c++rw ++l
  Oropetium_20150105_00632A  5 AWSKEEDVVLRAQVRLHGARDWEAISAALP-YRNAKSCRLRWCQHL 49
                               8*****************************.***********9986 PP

2Myb_DNA-binding39.61.2e-125899346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               ++T+ Ed  +v + + ++++ W+ Ia +++ gRt++ +k+rw+ 
  Oropetium_20150105_00632A 58 PFTPTEDAAIVSLQQAYPNK-WSIIAGHIP-GRTDNAIKNRWNA 99
                               79******************.*********.***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.766153IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-17252IPR009057Homeodomain-like
SuperFamilySSF466891.45E-27297IPR009057Homeodomain-like
SMARTSM007176.9E-14251IPR001005SANT/Myb domain
PfamPF002492.8E-12449IPR001005SANT/Myb domain
CDDcd001671.13E-13549No hitNo description
SMARTSM007177.1E-1155103IPR001005SANT/Myb domain
PROSITE profilePS5129416.25357105IPR017930Myb domain
CDDcd001677.19E-1058101No hitNo description
PfamPF002495.8E-115899IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-1858102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKKAAWSKEE DVVLRAQVRL HGARDWEAIS AALPYRNAKS CRLRWCQHLS PDVDDIRPFT  60
PTEDAAIVSL QQAYPNKWSI IAGHIPGRTD NAIKNRWNAV LRKKPPPPQN RVLTLLPLVS  120
GDIWAARRVA VPVIGHTPTV EGDGAGGGDQ GASCLNLFPL APGDVVGGDA SGAAPMDVDS  180
GADKQLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-22211310119MYB21
3osf_D2e-22211310119MYB21
3osg_A2e-22211310119MYB21
3osg_D2e-22211310119MYB21
3zqc_A2e-2231172115MYB3
3zqc_D2e-2231172115MYB3
3zqc_G2e-2231172115MYB3
3zqc_J2e-2231172115MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987088.16e-61PREDICTED: myb-related protein 308-like
SwissprotQ9FDW11e-28MYB44_ARATH; Transcription factor MYB44
TrEMBLK4ALU26e-61K4ALU2_SETIT; Uncharacterized protein
STRINGSi039876m2e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-34myb domain protein 77